Contents 1 Description 2 History 3 Causes 3.1 Spontaneous mutation 3.2 Error-prone replication bypass 3.3 Errors introduced during DNA repair 3.4 Induced mutation 4 Classification of types 4.1 By effect on structure 4.1.1 Small-scale mutations 4.1.2 Large-scale mutations 4.2 By effect on function 4.3 By effect on fitness 4.3.1 Distribution of fitness effects 4.4 By impact on protein sequence 4.5 By inheritance 4.6 Special classes 4.7 Nomenclature 5 Mutation rates 6 Harmful mutations 7 Beneficial mutations 8 Prion mutations 9 Somatic mutations 10 Amorphic mutations 11 Hypomorphic and hypermorphic mutations 12 See also 13 References 14 External links

Description[edit] Mutations can involve the duplication of large sections of DNA, usually through genetic recombination.[8] These duplications are a major source of raw material for evolving new genes, with tens to hundreds of genes duplicated in animal genomes every million years.[9] Most genes belong to larger gene families of shared ancestry, known as homology.[10] Novel genes are produced by several methods, commonly through the duplication and mutation of an ancestral gene, or by recombining parts of different genes to form new combinations with new functions.[11][12] Here, protein domains act as modules, each with a particular and independent function, that can be mixed together to produce genes encoding new proteins with novel properties.[13] For example, the human eye uses four genes to make structures that sense light: three for cone cell or color vision and one for rod cell or night vision; all four arose from a single ancestral gene.[14] Another advantage of duplicating a gene (or even an entire genome) is that this increases engineering redundancy; this allows one gene in the pair to acquire a new function while the other copy performs the original function.[15][16] Other types of mutation occasionally create new genes from previously noncoding DNA.[17][18] Changes in chromosome number may involve even larger mutations, where segments of the DNA within chromosomes break and then rearrange. For example, in the Homininae, two chromosomes fused to produce human chromosome 2; this fusion did not occur in the lineage of the other apes, and they retain these separate chromosomes.[19] In evolution, the most important role of such chromosomal rearrangements may be to accelerate the divergence of a population into new species by making populations less likely to interbreed, thereby preserving genetic differences between these populations.[20] Sequences of DNA that can move about the genome, such as transposons, make up a major fraction of the genetic material of plants and animals, and may have been important in the evolution of genomes.[21] For example, more than a million copies of the Alu sequence are present in the human genome, and these sequences have now been recruited to perform functions such as regulating gene expression.[22] Another effect of these mobile DNA sequences is that when they move within a genome, they can mutate or delete existing genes and thereby produce genetic diversity.[5] Nonlethal mutations accumulate within the gene pool and increase the amount of genetic variation.[23] The abundance of some genetic changes within the gene pool can be reduced by natural selection, while other "more favorable" mutations may accumulate and result in adaptive changes. Prodryas persephone, a Late Eocene butterfly For example, a butterfly may produce offspring with new mutations. The majority of these mutations will have no effect; but one might change the color of one of the butterfly's offspring, making it harder (or easier) for predators to see. If this color change is advantageous, the chance of this butterfly's surviving and producing its own offspring are a little better, and over time the number of butterflies with this mutation may form a larger percentage of the population. Neutral mutations are defined as mutations whose effects do not influence the fitness of an individual. These can accumulate over time due to genetic drift. It is believed that the overwhelming majority of mutations have no significant effect on an organism's fitness.[24][better source needed] Also, DNA repair mechanisms are able to mend most changes before they become permanent mutations, and many organisms have mechanisms for eliminating otherwise-permanently mutated somatic cells. Beneficial mutations can improve reproductive success.[25][26]

History[edit] Main article: Mutationism Hugo de Vries, making a painting of an evening primrose, the plant which had apparently produced new forms by large mutations in his experiments, by Thérèse Schwartze, 1918 Mutationism is one of several alternatives to evolution by natural selection that have existed both before and after the publication of Charles Darwin's 1859 book, On the Origin of Species. In the theory, mutation was the source of novelty, creating new forms and new species, potentially instantaneously,[27] in a sudden jump.[28] This was envisaged as driving evolution, which was limited by the supply of mutations. Before Darwin, biologists commonly believed in saltationism, the possibility of large evolutionary jumps, including immediate speciation. For example, in 1822 Étienne Geoffroy Saint-Hilaire argued that species could be formed by sudden transformations, or what would later be called macromutation.[29] Darwin opposed saltation, insisting on gradualism in evolution as in geology. In 1864, Albert von Kölliker revived Geoffroy's theory.[30] In 1901 the geneticist Hugo de Vries gave the name "mutation" to seemingly new forms that suddenly arose in his experiments on the evening primrose Oenothera lamarckiana, and in the first decade of the 20th century, mutationism, or as de Vries named it mutationstheorie,[31][27] became a rival to Darwinism supported for a while by geneticists including William Bateson,[32] Thomas Hunt Morgan, and Reginald Punnett.[33][27] Understanding of mutationism is clouded by the mid-20th century portrayal of the early mutationists by supporters of the modern synthesis as opponents of Darwinian evolution and rivals of the biometrics school who argued that selection operated on continuous variation. In this portrayal, mutationism was defeated by a synthesis of genetics and natural selection that supposedly started later, around 1918, with work by the mathematician Ronald Fisher.[34][35][36][37] However, the alignment of Mendelian genetics and natural selection began as early as 1902 with a paper by Udny Yule,[38] and built up with theoretical and experimental work in Europe and America. Despite the controversy, the early mutationists had by 1918 already accepted natural selection and explained continuous variation as the result of multiple genes acting on the same characteristic, such as height.[35][36] Mutationism, along with other alternatives to Darwinism like Lamarckism and orthogenesis, was discarded by most biologists as they came to see that Mendelian genetics and natural selection could readily work together; mutation took its place as a source of the genetic variation essential for natural selection to work on. However, mutationism did not entirely vanish. In 1940, Richard Goldschmidt again argued for single-step speciation by macromutation, describing the organisms thus produced as "hopeful monsters", earning widespread ridicule.[39][40] In 1987, Masatoshi Nei argued controversially that evolution was often mutation-limited.[41] Modern biologists such as Douglas J. Futuyma conclude that essentially all claims of evolution driven by large mutations can be explained by Darwinian evolution.[42]

Causes[edit] Main article: Mutagenesis Four classes of mutations are (1) spontaneous mutations (molecular decay), (2) mutations due to error-prone replication bypass of naturally occurring DNA damage (also called error-prone translesion synthesis), (3) errors introduced during DNA repair, and (4) induced mutations caused by mutagens. Scientists may also deliberately introduce mutant sequences through DNA manipulation for the sake of scientific experimentation. One 2017 study claimed that 66% of cancer-causing mutations are random, 29% are due to the environment (the studied population spanned 69 countries), and 5% are inherited.[43] Spontaneous mutation[edit] Spontaneous mutations occur with non-zero probability even given a healthy, uncontaminated cell. They can be characterized by the specific change:[44] Tautomerism — A base is changed by the repositioning of a hydrogen atom, altering the hydrogen bonding pattern of that base, resulting in incorrect base pairing during replication. Depurination — Loss of a purine base (A or G) to form an apurinic site (AP site). Deamination — Hydrolysis changes a normal base to an atypical base containing a keto group in place of the original amine group. Examples include C → U and A → HX (hypoxanthine), which can be corrected by DNA repair mechanisms; and 5MeC (5-methylcytosine) → T, which is less likely to be detected as a mutation because thymine is a normal DNA base. Slipped strand mispairing — Denaturation of the new strand from the template during replication, followed by renaturation in a different spot ("slipping"). This can lead to insertions or deletions. Error-prone replication bypass[edit] There is increasing evidence that the majority of spontaneously arising mutations are due to error-prone replication (translesion synthesis) past DNA damage in the template strand. Naturally occurring oxidative DNA damages arise at least 10,000 times per cell per day in humans and 50,000 times or more per cell per day in rats.[45] In mice, the majority of mutations are caused by translesion synthesis.[46] Likewise, in yeast, Kunz et al.[47] found that more than 60% of the spontaneous single base pair substitutions and deletions were caused by translesion synthesis. Errors introduced during DNA repair[edit] See also: DNA damage (naturally occurring) and DNA repair Although naturally occurring double-strand breaks occur at a relatively low frequency in DNA, their repair often causes mutation. Non-homologous end joining (NHEJ) is a major pathway for repairing double-strand breaks. NHEJ involves removal of a few nucleotides to allow somewhat inaccurate alignment of the two ends for rejoining followed by addition of nucleotides to fill in gaps. As a consequence, NHEJ often introduces mutations.[48] A covalent adduct between the metabolite of benzo[a]pyrene, the major mutagen in tobacco smoke, and DNA[49] Induced mutation[edit] Induced mutations are alterations in the gene after it has come in contact with mutagens and environmental causes. Induced mutations on the molecular level can be caused by: Chemicals Hydroxylamine Base analogs (e.g., Bromodeoxyuridine (BrdU)) Alkylating agents (e.g., N-ethyl-N-nitrosourea (ENU)). These agents can mutate both replicating and non-replicating DNA. In contrast, a base analog can mutate the DNA only when the analog is incorporated in replicating the DNA. Each of these classes of chemical mutagens has certain effects that then lead to transitions, transversions, or deletions. Agents that form DNA adducts (e.g., ochratoxin A)[50] DNA intercalating agents (e.g., ethidium bromide) DNA crosslinkers This figure depicts the following processes of transcription, splicing, and translation of a eukaryotic gene. Oxidative damage Nitrous acid converts amine groups on A and C to diazo groups, altering their hydrogen bonding patterns, which leads to incorrect base pairing during replication. Radiation Ultraviolet light (UV) (non-ionizing radiation). Two nucleotide bases in DNA—cytosine and thymine—are most vulnerable to radiation that can change their properties. UV light can induce adjacent pyrimidine bases in a DNA strand to become covalently joined as a pyrimidine dimer. UV radiation, in particular longer-wave UVA, can also cause oxidative damage to DNA.[51] Ionizing radiation. Exposure to ionizing radiation, such as gamma radiation, can result in mutation, possibly resulting in cancer or death.

Classification of types[edit] See also: Chromosome abnormality By effect on structure[edit] Five types of chromosomal mutations. Selection of disease-causing mutations, in a standard table of the genetic code of amino acids.[52] The sequence of a gene can be altered in a number of ways.[53] Gene mutations have varying effects on health depending on where they occur and whether they alter the function of essential proteins. Mutations in the structure of genes can be classified into several types. Small-scale mutations[edit] Small-scale mutations, affecting a gene in one or a few nucleotides, include: Substitution mutations, often caused by chemicals or malfunction of DNA replication, exchange a single nucleotide for another.[54] These changes are classified as transitions or transversions.[55] Most common is the transition that exchanges a purine for a purine (A ↔ G) or a pyrimidine for a pyrimidine, (C ↔ T). A transition can be caused by nitrous acid, base mis-pairing, or mutagenic base analogs such as BrdU. Less common is a transversion, which exchanges a purine for a pyrimidine or a pyrimidine for a purine (C/T ↔ A/G). An example of a transversion is the conversion of adenine (A) into a cytosine (C). A point mutation are modifications of single base pairs of DNA or other small base pairs within a gene. A point mutation can be reversed by another point mutation, in which the nucleotide is changed back to its original state (true reversion) or by second-site reversion (a complementary mutation elsewhere that results in regained gene functionality). Point mutations that occur within the protein coding region of a gene may be classified into three kinds, depending upon what the erroneous codon codes for: Silent mutations, which code for the same (or a sufficiently similar) amino acid. Missense mutations, which code for a different amino acid. Nonsense mutations, which code for a stop codon and can truncate the protein. Insertions add one or more extra nucleotides into the DNA. They are usually caused by transposable elements, or errors during replication of repeating elements. Insertions in the coding region of a gene may alter splicing of the mRNA (splice site mutation), or cause a shift in the reading frame (frameshift), both of which can significantly alter the gene product. Insertions can be reversed by excision of the transposable element. (Point) deletions remove one or more nucleotides from the DNA. Like insertions, these mutations can alter the reading frame of the gene. In general, they are irreversible: Though exactly the same sequence might in theory be restored by an insertion, transposable elements able to revert a very short deletion (say 1–2 bases) in any location either are highly unlikely to exist or do not exist at all. Large-scale mutations[edit] Large-scale mutations in chromosomal structure include: Amplifications (or gene duplications) leading to multiple copies of all chromosomal regions, increasing the dosage of the genes located within them. Deletions of large chromosomal regions, leading to loss of the genes within those regions. Mutations whose effect is to juxtapose previously separate pieces of DNA, potentially bringing together separate genes to form functionally distinct fusion genes (e.g., bcr-abl). These include: Chromosomal translocations: interchange of genetic parts from nonhomologous chromosomes. Interstitial deletions: an intra-chromosomal deletion that removes a segment of DNA from a single chromosome, thereby apposing previously distant genes. For example, cells isolated from a human astrocytoma, a type of brain tumor, were found to have a chromosomal deletion removing sequences between the Fused in Glioblastoma (FIG) gene and the receptor tyrosine kinase (ROS), producing a fusion protein (FIG-ROS). The abnormal FIG-ROS fusion protein has constitutively active kinase activity that causes oncogenic transformation (a transformation from normal cells to cancer cells). Chromosomal inversions: reversing the orientation of a chromosomal segment. Loss of heterozygosity: loss of one allele, either by a deletion or a genetic recombination event, in an organism that previously had two different alleles. By effect on function[edit] See also: Behavior mutation Loss-of-function mutations, also called inactivating mutations, result in the gene product having less or no function (being partially or wholly inactivated). When the allele has a complete loss of function (null allele), it is often called an amorph or amorphic mutation in the Muller's morphs schema. Phenotypes associated with such mutations are most often recessive. Exceptions are when the organism is haploid, or when the reduced dosage of a normal gene product is not enough for a normal phenotype (this is called haploinsufficiency). Gain-of-function mutations, also called activating mutations, change the gene product such that its effect gets stronger (enhanced activation) or even is superseded by a different and abnormal function. When the new allele is created, a heterozygote containing the newly created allele as well as the original will express the new allele; genetically this defines the mutations as dominant phenotypes. Several of Muller's morphs correspond to gain of function, including hypermorph and neomorph. In December 2017, the U.S. government lifted a temporary ban implemented in 2014 that banned federal funding for any new "gain-of-function" experiments that enhance pathogens "such as Avian influenza, SARS and the Middle East Respiratory Syndrome or MERS viruses."[56] Dominant negative mutations (also called antimorphic mutations) have an altered gene product that acts antagonistically to the wild-type allele. These mutations usually result in an altered molecular function (often inactive) and are characterized by a dominant or semi-dominant phenotype. In humans, dominant negative mutations have been implicated in cancer (e.g., mutations in genes p53,[57] ATM,[58] CEBPA[59] and PPARgamma[60]). Marfan syndrome is caused by mutations in the FBN1 gene, located on chromosome 15, which encodes fibrillin-1, a glycoprotein component of the extracellular matrix.[61] Marfan syndrome is also an example of dominant negative mutation and haploinsufficiency.[62][63] Hypomorph, after Mullarian classification is altered gene product that acts with decreased gene expression compared to wild type allele. Neomorph is characterized by the control of new protein product synthesis. Lethal mutations are mutations that lead to the death of the organisms that carry the mutations. A back mutation or reversion is a point mutation that restores the original sequence and hence the original phenotype.[64] By effect on fitness[edit] See also: Fitness (biology) In applied genetics, it is usual to speak of mutations as either harmful or beneficial. A harmful, or deleterious, mutation decreases the fitness of the organism. A beneficial, or advantageous mutation increases the fitness of the organism. Mutations that promotes traits that are desirable, are also called beneficial. In theoretical population genetics, it is more usual to speak of mutations as deleterious or advantageous than harmful or beneficial. A neutral mutation has no harmful or beneficial effect on the organism. Such mutations occur at a steady rate, forming the basis for the molecular clock. In the neutral theory of molecular evolution, neutral mutations provide genetic drift as the basis for most variation at the molecular level. A nearly neutral mutation is a mutation that may be slightly deleterious or advantageous, although most nearly neutral mutations are slightly deleterious. Distribution of fitness effects[edit] Attempts have been made to infer the distribution of fitness effects (DFE) using mutagenesis experiments and theoretical models applied to molecular sequence data. DFE, as used to determine the relative abundance of different types of mutations (i.e., strongly deleterious, nearly neutral or advantageous), is relevant to many evolutionary questions, such as the maintenance of genetic variation,[65] the rate of genomic decay,[66] the maintenance of outcrossing sexual reproduction as opposed to inbreeding[67] and the evolution of sex and genetic recombination.[68] In summary, the DFE plays an important role in predicting evolutionary dynamics.[69][70] A variety of approaches have been used to study the DFE, including theoretical, experimental and analytical methods. Mutagenesis experiment: The direct method to investigate the DFE is to induce mutations and then measure the mutational fitness effects, which has already been done in viruses, bacteria, yeast, and Drosophila. For example, most studies of the DFE in viruses used site-directed mutagenesis to create point mutations and measure relative fitness of each mutant.[71][72][73][74] In Escherichia coli, one study used transposon mutagenesis to directly measure the fitness of a random insertion of a derivative of Tn10.[75] In yeast, a combined mutagenesis and deep sequencing approach has been developed to generate high-quality systematic mutant libraries and measure fitness in high throughput.[76] However, given that many mutations have effects too small to be detected[77] and that mutagenesis experiments can detect only mutations of moderately large effect; DNA sequence data analysis can provide valuable information about these mutations. The distribution of fitness effects (DFE) of mutations in vesicular stomatitis virus. In this experiment, random mutations were introduced into the virus by site-directed mutagenesis, and the fitness of each mutant was compared with the ancestral type. A fitness of zero, less than one, one, more than one, respectively, indicates that mutations are lethal, deleterious, neutral, and advantageous.[71] Molecular sequence analysis: With rapid development of DNA sequencing technology, an enormous amount of DNA sequence data is available and even more is forthcoming in the future. Various methods have been developed to infer the DFE from DNA sequence data.[78][79][80][81] By examining DNA sequence differences within and between species, we are able to infer various characteristics of the DFE for neutral, deleterious and advantageous mutations.[23] To be specific, the DNA sequence analysis approach allows us to estimate the effects of mutations with very small effects, which are hardly detectable through mutagenesis experiments. One of the earliest theoretical studies of the distribution of fitness effects was done by Motoo Kimura, an influential theoretical population geneticist. His neutral theory of molecular evolution proposes that most novel mutations will be highly deleterious, with a small fraction being neutral.[82][83] Hiroshi Akashi more recently proposed a bimodal model for the DFE, with modes centered around highly deleterious and neutral mutations.[84] Both theories agree that the vast majority of novel mutations are neutral or deleterious and that advantageous mutations are rare, which has been supported by experimental results. One example is a study done on the DFE of random mutations in vesicular stomatitis virus.[71] Out of all mutations, 39.6% were lethal, 31.2% were non-lethal deleterious, and 27.1% were neutral. Another example comes from a high throughput mutagenesis experiment with yeast.[76] In this experiment it was shown that the overall DFE is bimodal, with a cluster of neutral mutations, and a broad distribution of deleterious mutations. Though relatively few mutations are advantageous, those that are play an important role in evolutionary changes.[85] Like neutral mutations, weakly selected advantageous mutations can be lost due to random genetic drift, but strongly selected advantageous mutations are more likely to be fixed. Knowing the DFE of advantageous mutations may lead to increased ability to predict the evolutionary dynamics. Theoretical work on the DFE for advantageous mutations has been done by John H. Gillespie[86] and H. Allen Orr.[87] They proposed that the distribution for advantageous mutations should be exponential under a wide range of conditions, which, in general, has been supported by experimental studies, at least for strongly selected advantageous mutations.[88][89][90] In general, it is accepted that the majority of mutations are neutral or deleterious, with rare mutations being advantageous; however, the proportion of types of mutations varies between species. This indicates two important points: first, the proportion of effectively neutral mutations is likely to vary between species, resulting from dependence on effective population size; second, the average effect of deleterious mutations varies dramatically between species.[23] In addition, the DFE also differs between coding regions and noncoding regions, with the DFE of noncoding DNA containing more weakly selected mutations.[23] By impact on protein sequence[edit] A frameshift mutation is a mutation caused by insertion or deletion of a number of nucleotides that is not evenly divisible by three from a DNA sequence. Due to the triplet nature of gene expression by codons, the insertion or deletion can disrupt the reading frame, or the grouping of the codons, resulting in a completely different translation from the original.[91] The earlier in the sequence the deletion or insertion occurs, the more altered the protein produced is. For example, the code CCU GAC UAC CUA codes for the amino acids Proline, Aspartic, Tyrosine, and Leucine. If the U in CCU was deleted, the resulting sequence would be CCG ACU ACC UAx, which would instead code for Proline, Threonine, Threonine, and part of another amino acid (where the x stands for the following nucleotide). In contrast, any insertion or deletion that is evenly divisible by three is termed an in-frame mutation. A nonsense mutation is a point mutation in a sequence of DNA that results in a premature stop codon, or a nonsense codon in the transcribed mRNA, and possibly a truncated, and often nonfunctional protein product. This sort of mutation has been linked to different mutations, such as congenital adrenal hyperplasia. (See Stop codon.) Missense mutations or nonsynonymous mutations are types of point mutations where a single nucleotide is changed to cause substitution of a different amino acid. This in turn can render the resulting protein nonfunctional. Such mutations are responsible for diseases such as Epidermolysis bullosa, sickle-cell disease, and SOD1-mediated ALS.[92] A neutral mutation is a mutation that occurs in an amino acid codon that results in the use of a different, but chemically similar, amino acid. The similarity between the two is enough that little or no change is often rendered in the protein. For example, a change from AAA to AGA will encode arginine, a chemically similar molecule to the intended lysine. Silent mutations are mutations that do not result in a change to the amino acid sequence of a protein but do change the nucleotide sequence, unless the changed amino acid is sufficiently similar to the original. They may occur in a region that does not code for a protein, or they may occur within a codon in a manner that does not alter the final amino acid sequence. Silent mutations are also called silent substitutions, since they are not palpable changes as the changes in phenotype. The phrase silent mutation is often used interchangeably with the phrase synonymous mutation; however, synonymous mutations are a subcategory of the former, occurring only within exons (and necessarily exactly preserving the amino acid sequence of the protein). Synonymous mutations occur due to the degenerate nature of the genetic code. There can also be silent mutations in nucleotides outside of the coding regions, such as the introns, because the exact nucleotide sequence is not as crucial as it is in the coding regions. By inheritance[edit] A mutation has caused this garden moss rose to produce flowers of different colors. This is a somatic mutation that may also be passed on in the germline. In multicellular organisms with dedicated reproductive cells, mutations can be subdivided into germline mutations, which can be passed on to descendants through their reproductive cells, and somatic mutations (also called acquired mutations),[93] which involve cells outside the dedicated reproductive group and which are not usually transmitted to descendants. A germline mutation gives rise to a constitutional mutation in the offspring, that is, a mutation that is present in every cell. A constitutional mutation can also occur very soon after fertilisation, or continue from a previous constitutional mutation in a parent.[94] The distinction between germline and somatic mutations is important in animals that have a dedicated germline to produce reproductive cells. However, it is of little value in understanding the effects of mutations in plants, which lack dedicated germline. The distinction is also blurred in those animals that reproduce asexually through mechanisms such as budding, because the cells that give rise to the daughter organisms also give rise to that organism's germline. A new germline mutation not inherited from either parent is called a de novo mutation. Diploid organisms (e.g., humans) contain two copies of each gene—a paternal and a maternal allele. Based on the occurrence of mutation on each chromosome, we may classify mutations into three types. A heterozygous mutation is a mutation of only one allele. A homozygous mutation is an identical mutation of both the paternal and maternal alleles. Compound heterozygous mutations or a genetic compound consists of two different mutations in the paternal and maternal alleles.[95] A wild type or homozygous non-mutated organism is one in which neither allele is mutated. Special classes[edit] Conditional mutation is a mutation that has wild-type (or less severe) phenotype under certain "permissive" environmental conditions and a mutant phenotype under certain "restrictive" conditions. For example, a temperature-sensitive mutation can cause cell death at high temperature (restrictive condition), but might have no deleterious consequences at a lower temperature (permissive condition).[96] These mutations are non-autonomous, as their manifestation depends upon presence of certain conditions, as opposed to other mutations which appear autonomously.[97] The permissive conditions may be temperature,[98] certain chemicals,[99] light[99] or mutations in other parts of the genome.[97] In vivo mechanisms like transcriptional switches can create conditional mutations. For instance, association of Steroid Binding Domain can create a transcriptional switch that can change the expression of a gene based on the presence of a steroid ligand.[100] Conditional mutations have applications in research as they allow control over gene expression. This is especially useful studying diseases in adults by allowing expression after a certain period of growth, thus eliminating the deleterious effect of gene expression seen during stages of development in model organisms.[99] DNA Recombinase systems like Cre-Lox Recombination used in association with promoters that are activated under certain conditions can generate conditional mutations. Dual Recombinase technology can be used to induce multiple conditional mutations to study the diseases which manifest as a result of simultaneous mutations in multiple genes.[99] Certain inteins have been identified which splice only at certain permissive temperatures, leading to improper protein synthesis and thus, loss of function mutations at other temperatures.[101] Conditional mutations may also be used in genetic studies associated with ageing, as the expression can be changed after a certain time period in the organism's lifespan.[98] Replication timing quantitative trait loci affects DNA replication. Nomenclature[edit] In order to categorize a mutation as such, the "normal" sequence must be obtained from the DNA of a "normal" or "healthy" organism (as opposed to a "mutant" or "sick" one), it should be identified and reported; ideally, it should be made publicly available for a straightforward nucleotide-by-nucleotide comparison, and agreed upon by the scientific community or by a group of expert geneticists and biologists, who have the responsibility of establishing the standard or so-called "consensus" sequence. This step requires a tremendous scientific effort. Once the consensus sequence is known, the mutations in a genome can be pinpointed, described, and classified. The committee of the Human Genome Variation Society (HGVS) has developed the standard human sequence variant nomenclature,[102] which should be used by researchers and DNA diagnostic centers to generate unambiguous mutation descriptions. In principle, this nomenclature can also be used to describe mutations in other organisms. The nomenclature specifies the type of mutation and base or amino acid changes. Nucleotide substitution (e.g., 76A>T) — The number is the position of the nucleotide from the 5' end; the first letter represents the wild-type nucleotide, and the second letter represents the nucleotide that replaced the wild type. In the given example, the adenine at the 76th position was replaced by a thymine. If it becomes necessary to differentiate between mutations in genomic DNA, mitochondrial DNA, and RNA, a simple convention is used. For example, if the 100th base of a nucleotide sequence mutated from G to C, then it would be written as g.100G>C if the mutation occurred in genomic DNA, m.100G>C if the mutation occurred in mitochondrial DNA, or r.100g>c if the mutation occurred in RNA. Note that, for mutations in RNA, the nucleotide code is written in lower case. Amino acid substitution (e.g., D111E) — The first letter is the one letter code of the wild-type amino acid, the number is the position of the amino acid from the N-terminus, and the second letter is the one letter code of the amino acid present in the mutation. Nonsense mutations are represented with an X for the second amino acid (e.g. D111X). Amino acid deletion (e.g., ΔF508) — The Greek letter Δ (delta) indicates a deletion. The letter refers to the amino acid present in the wild type and the number is the position from the N terminus of the amino acid were it to be present as in the wild type.

Mutation rates[edit] Further information: Mutation rate Mutation rates vary substantially across species, and the evolutionary forces that generally determine mutation are the subject of ongoing investigation.

Harmful mutations[edit] Changes in DNA caused by mutation can cause errors in protein sequence, creating partially or completely non-functional proteins. Each cell, in order to function correctly, depends on thousands of proteins to function in the right places at the right times. When a mutation alters a protein that plays a critical role in the body, a medical condition can result. Some mutations alter a gene's DNA base sequence but do not change the function of the protein made by the gene. One study on the comparison of genes between different species of Drosophila suggests that if a mutation does change a protein, this will probably be harmful, with an estimated 70 percent of amino acid polymorphisms having damaging effects, and the remainder being either neutral or weakly beneficial.[7] Studies have shown that only 7% of point mutations in noncoding DNA of yeast are deleterious and 12% in coding DNA are deleterious. The rest of the mutations are either neutral or slightly beneficial.[103] If a mutation is present in a germ cell, it can give rise to offspring that carries the mutation in all of its cells. This is the case in hereditary diseases. In particular, if there is a mutation in a DNA repair gene within a germ cell, humans carrying such germline mutations may have an increased risk of cancer. A list of 34 such germline mutations is given in the article DNA repair-deficiency disorder. An example of one is albinism, a mutation that occurs in the OCA1 or OCA2 gene. Individuals with this disorder are more prone to many types of cancers, other disorders and have impaired vision. On the other hand, a mutation may occur in a somatic cell of an organism. Such mutations will be present in all descendants of this cell within the same organism, and certain mutations can cause the cell to become malignant, and, thus, cause cancer.[104] A DNA damage can cause an error when the DNA is replicated, and this error of replication can cause a gene mutation that, in turn, could cause a genetic disorder. DNA damages are repaired by the DNA repair system of the cell. Each cell has a number of pathways through which enzymes recognize and repair damages in DNA. Because DNA can be damaged in many ways, the process of DNA repair is an important way in which the body protects itself from disease. Once DNA damage has given rise to a mutation, the mutation cannot be repaired. DNA repair pathways can only recognize and act on "abnormal" structures in the DNA. Once a mutation occurs in a gene sequence it then has normal DNA structure and cannot be repaired.

Beneficial mutations[edit] Although mutations that cause changes in protein sequences can be harmful to an organism, on occasions the effect may be positive in a given environment. In this case, the mutation may enable the mutant organism to withstand particular environmental stresses better than wild-type organisms, or reproduce more quickly. In these cases a mutation will tend to become more common in a population through natural selection. For example, a specific 32 base pair deletion in human CCR5 (CCR5-Δ32) confers HIV resistance to homozygotes and delays AIDS onset in heterozygotes.[105] One possible explanation of the etiology of the relatively high frequency of CCR5-Δ32 in the European population is that it conferred resistance to the bubonic plague in mid-14th century Europe. People with this mutation were more likely to survive infection; thus its frequency in the population increased.[106] This theory could explain why this mutation is not found in Southern Africa, which remained untouched by bubonic plague. A newer theory suggests that the selective pressure on the CCR5 Delta 32 mutation was caused by smallpox instead of the bubonic plague.[107] An example of a harmful mutation is sickle-cell disease, a blood disorder in which the body produces an abnormal type of the oxygen-carrying substance hemoglobin in the red blood cells. One-third of all indigenous inhabitants of Sub-Saharan Africa carry the gene, because, in areas where malaria is common, there is a survival value in carrying only a single sickle-cell gene (sickle cell trait).[108] Those with only one of the two alleles of the sickle-cell disease are more resistant to malaria, since the infestation of the malaria Plasmodium is halted by the sickling of the cells that it infests.

Prion mutations[edit] Prions are proteins and do not contain genetic material. However, prion replication has been shown to be subject to mutation and natural selection just like other forms of replication.[109] The human gene PRNP codes for the major prion protein, PrP, and is subject to mutations that can give rise to disease-causing prions.

Somatic mutations[edit] Main article: Loss of heterozygosity See also: Carcinogenesis A change in the genetic structure that is not inherited from a parent, and also not passed to offspring, is called a somatic mutation.[93] Somatic mutations are not inherited because they do not affect the germline. These types of mutations are usually prompted by environmental causes, such as ultraviolet radiation or any exposure to certain harmful chemicals, and can cause diseases including cancer.[110] With plants, some somatic mutations can be bred without the need for seed production, for example, by grafting and stem cuttings. These type of mutation have led to new types of fruits, such as the "Delicious" apple and the "Washington" navel orange.[111] Human and mouse somatic cells have a mutation rate more than ten times higher than the germline mutation rate for both species; mice have a higher rate of both somatic and germline mutations per cell division than humans. The disparity in mutation rate between the germline and somatic tissues likely reflects the greater importance of genome maintenance in the germline than in the soma.[112]

Amorphic mutations[edit] An Amorph (gene), a term utilized by Muller in 1932, is a mutated allele, which has lost the ability of the parent (whether wild type or any other type) allele to encode any functional protein. An amorphic mutation may be caused by the replacement of an amino acid that deactivates an enzyme or by the deletion of part of a gene that produces the enzyme. Cells with heterozygous mutations (one good copy of gene and one mutated copy) may function normally with the unmutated copy until the good copy has been spontaneously somatically mutated. This kind of mutation happens all the time in living organisms, but it is difficult to measure the rate. Measuring this rate is important in predicting the rate at which people may develop cancer.[113] Point mutations may arise from spontaneous mutations that occur during DNA replication. The rate of mutation may be increased by mutagens. Mutagens can be physical, such as radiation from UV rays, X-rays or extreme heat, or chemical (molecules that misplace base pairs or disrupt the helical shape of DNA). Mutagens associated with cancers are often studied to learn about cancer and its prevention.

Hypomorphic and hypermorphic mutations[edit] A hypomorphic mutation is a replacement of amino acids that would hinder enzyme activity, which would reduce the enzyme level but not to the point of complete loss. Usually, hypomorphic mutations are recessive, but haploinsufficiency causes some alleles to be dominant. A hypermorphic mutation changes the regulation of the gene and causes it to overproduce the gene produce causing a greater than normal enzyme levels. These type of alleles are dominant gain of function type of alleles.

See also[edit] Aneuploidy Antioxidant Budgerigar colour genetics Carcinogenesis Ecogenetics Embryology Frameshift mutation Homeobox Muller's morphs Mutagenesis Mutant Mutation rate Polyploidy Robertsonian translocation Saltation (biology) Signature-tagged mutagenesis Site-directed mutagenesis TILLING (molecular biology) Trinucleotide repeat expansion

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External links[edit] Wikimedia Commons has media related to Mutations. Jones, Steve; Woolfson, Adrian; Partridge, Linda (December 6, 2007). "Genetic Mutation". In Our Time. BBC Radio 4. Retrieved 2015-10-18.  Liou, Stephanie (February 5, 2011). "All About Mutations". HOPES. Huntington's Disease Outreach Project for Education at Stanford. Retrieved 2015-10-18.  "Locus Specific Mutation Databases". Leiden, the Netherlands: Leiden University Medical Center. Retrieved 2015-10-18.  "Welcome to the Mutalyzer website". Leiden, the Netherlands: Leiden University Medical Center. Retrieved 2015-10-18.  — The Mutalyzer website. v t e Mutation Mechanisms of mutation Insertion Deletion Substitution Transversion Transition Mutation with respect to structure Point mutation Nonsense mutation Missense mutation Conservative mutation Silent mutation Frameshift mutation Dynamic mutation Large-scale mutation Chromosomal translocations Chromosomal inversions Mutation with respect to overall fitness Deleterious mutation Advantageous mutation Neutral mutation Nearly neutral mutation v t e Chromosome abnormalities (Q90–Q99, 758) Autosomal Trisomies Down syndrome 21 Edwards syndrome 18 Patau syndrome 13 Trisomy 9 Warkany syndrome 2 8 Cat eye syndrome/Trisomy 22 22 Trisomy 16 Monosomies/deletions 1q21.1 deletion syndrome/1q21.1 duplication syndrome/TAR syndrome 1 Wolf–Hirschhorn syndrome 4 Cri du chat/Chromosome 5q deletion syndrome 5 Williams syndrome 7 Jacobsen syndrome 11 Miller–Dieker syndrome/Smith–Magenis syndrome 17 DiGeorge syndrome 22 22q11.2 distal deletion syndrome 22 22q13 deletion syndrome 22 genomic imprinting Angelman syndrome/Prader–Willi syndrome (15) Distal 18q-/Proximal 18q- X/Y linked Monosomy Turner syndrome (45,X) Trisomy/tetrasomy, other karyotypes/mosaics Klinefelter syndrome (47,XXY) XXYY syndrome (48,XXYY) XXXY syndrome (48,XXXY) 49,XXXYY 49,XXXXY Triple X syndrome (47,XXX) Tetrasomy X (48,XXXX) 49,XXXXX Jacobs syndrome (47,XYY) 48,XYYY 49,XYYYY 45,X/46,XY Translocations Leukemia/lymphoma Lymphoid Burkitt's lymphoma t(8 MYC;14 IGH) Follicular lymphoma t(14 IGH;18 BCL2) Mantle cell lymphoma/Multiple myeloma t(11 CCND1:14 IGH) Anaplastic large-cell lymphoma t(2 ALK;5 NPM1) Acute lymphoblastic leukemia Myeloid Philadelphia chromosome t(9 ABL; 22 BCR) Acute myeloblastic leukemia with maturation t(8 RUNX1T1;21 RUNX1) Acute promyelocytic leukemia t(15 PML,17 RARA) Acute megakaryoblastic leukemia t(1 RBM15;22 MKL1) Other Ewing's sarcoma t(11 FLI1; 22 EWS) Synovial sarcoma t(x SYT;18 SSX) Dermatofibrosarcoma protuberans t(17 COL1A1;22 PDGFB) Myxoid liposarcoma t(12 DDIT3; 16 FUS) Desmoplastic small-round-cell tumor t(11 WT1; 22 EWS) Alveolar rhabdomyosarcoma t(2 PAX3; 13 FOXO1) t (1 PAX7; 13 FOXO1) Other Fragile X syndrome Uniparental disomy XX male syndrome/46,XX testicular disorders of sex development Marker chromosome Ring chromosome 6; 9; 14; 15; 18; 20; 21, 22 v t e Evolutionary biology Evolutionary history of life Index of evolutionary biology articles Introduction Outline of evolution Timeline of evolution Evolution Abiogenesis Adaptation Adaptive radiation Cladistics Coevolution Common descent Cospeciation Convergence Divergence Earliest known life forms Evidence of common descent Extinction Event Gene-centered view Homology Last universal common ancestor Macroevolution Microevolution Origin of life Panspermia Parallel evolution Prehistoric Autopsy Speciation Taxonomy Population genetics Biodiversity Gene flow Genetic drift Mutation Natural selection Variation Development Canalisation Evolutionary developmental biology Inversion Modularity Phenotypic plasticity Of taxa Birds origin Brachiopods Cephalopods Dinosaurs Fish Fungi Insects butterflies Life Mammals cats dogs dolphins and whales horses primates humans lemurs sea cows wolves Molluscs Plants Reptiles Spiders Tetrapods Viruses influenza Of organs Cell DNA Flagella Eukaryotes symbiogenesis chromosome endomembrane system mitochondria nucleus plastids In animals eye hair auditory ossicle nervous system brain Of processes Aging Death Programmed cell death Avian flight Biological complexity Cooperation Color vision in primates Emotion Empathy Ethics Eusociality Immune system Metabolism Monogamy Morality Mosaic evolution Multicellularity Sexual reproduction Gamete differentiation/sexes Life cycles/nuclear phases Mating types Sex-determination Snake venom Tempo and modes Gradualism/Punctuated equilibrium/Saltationism Micromutation/Macromutation Uniformitarianism/Catastrophism Speciation Allopatric Anagenesis Catagenesis Cladogenesis Ecological Hybrid Parapatric Peripatric Reinforcement Sympatric History Renaissance and Enlightenment Transmutation of species Charles Darwin On the Origin of Species History of paleontology Transitional fossil Blending inheritance Mendelian inheritance The eclipse of Darwinism Modern synthesis History of molecular evolution Extended evolutionary synthesis Philosophy Darwinism Alternatives to evolution by natural selection Catastrophism Lamarckism Orthogenesis Mutationism Saltationism Structuralism Spandrel Theistic Vitalism Related Biogeography Ecological genetics Molecular evolution Phylogenetics Tree Polymorphism Protocell Systematics Category Commons Portal WikiProject Biology portal Medicine portal Evolutionary biology portal Retrieved from "" Categories: MutationEvolutionary biologyGeneticsRadiation health effectsMolecular evolutionHidden categories: Pages with DOIs inactive since 2017CS1 maint: Multiple names: authors listWebarchive template wayback linksPages containing links to subscription-only contentAll articles lacking reliable referencesArticles lacking reliable references from January 2017Pages using div col without cols and colwidth parametersPages using Columns-list with deprecated parametersUse dmy dates from July 2011

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Mutations - Photos and All Basic Informations

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SyndromePrader–Willi SyndromeChromosome 15 (human)Distal 18q-Proximal 18q-X ChromosomeY ChromosomeMonosomyTurner SyndromeTrisomyTetrasomyAneuploidyMosaic (genetics)Klinefelter SyndromeXXYY SyndromeXXXY Syndrome49, XXXXY SyndromeTriple X SyndromeTetrasomy X49, XXXXXXYY Syndrome45,X/46,XY MosaicismChromosomal TranslocationLeukemiaLymphomaBurkitt's LymphomaMycIGH@Follicular LymphomaIGH@Bcl-2Mantle Cell LymphomaMultiple MyelomaCyclin D1IGH@Anaplastic Large-cell LymphomaAnaplastic Lymphoma KinaseNPM1Acute Lymphoblastic LeukemiaPhiladelphia ChromosomeABL (gene)BCR (gene)Acute Myeloblastic Leukemia With MaturationRUNX1T1RUNX1Acute Promyelocytic LeukemiaPromyelocytic Leukemia ProteinRetinoic Acid Receptor AlphaAcute Megakaryoblastic LeukemiaRBM15MKL1Ewing's SarcomaFLI1Ewing Sarcoma Breakpoint Region 1Synovial SarcomaSynaptotagmin 1Synovial Sarcoma, X BreakpointDermatofibrosarcoma ProtuberansCollagen, Type I, Alpha 1PDGFBMyxoid LiposarcomaDNA Damage-inducible Transcript 3FUS (gene)Desmoplastic Small-round-cell TumorWT1Ewing Sarcoma Breakpoint Region 1Alveolar RhabdomyosarcomaPAX3FOXO1PAX7FOXO1Fragile X SyndromeUniparental DisomyXX Male Syndrome46,XX Testicular Disorders Of Sex DevelopmentMarker ChromosomeRing ChromosomeRing Chromosome 14 SyndromeRing Chromosome 18Ring Chromosome 20 SyndromeTemplate:EvolutionTemplate Talk:EvolutionEvolutionary BiologyEvolutionary History Of LifeIndex Of Evolutionary Biology ArticlesIntroduction To EvolutionOutline Of EvolutionTimeline Of Evolutionary History Of LifeEvolutionAbiogenesisAdaptationAdaptive RadiationCladisticsCoevolutionCommon DescentCospeciationConvergent EvolutionDivergent EvolutionEarliest Known Life FormsEvidence Of Common DescentExtinctionExtinction EventGene-centered View Of EvolutionHomology (biology)Last Universal Common AncestorMacroevolutionMicroevolutionAbiogenesisPanspermiaParallel EvolutionPrehistoric AutopsySpeciationEvolutionary TaxonomyPopulation GeneticsBiodiversityGene FlowGenetic DriftNatural SelectionGenetic VariationCanalisation (genetics)Evolutionary Developmental BiologyInversion (evolutionary Biology)Modularity (biology)Phenotypic PlasticityTaxonEvolution Of BirdsOrigin Of BirdsEvolution Of BrachiopodsEvolution Of CephalopodsEvolution Of DinosaursEvolution Of FishEvolution Of FungiEvolution Of InsectsEvolution Of ButterfliesEvolutionary History Of LifeEvolution Of MammalsCat GapOrigin Of The Domestic DogEvolution Of CetaceansEvolution Of The HorseEvolution Of PrimatesHuman EvolutionEvolution Of LemursEvolution Of SireniansEvolution Of The WolfEvolution Of MolluscsEvolutionary History Of PlantsEvolution Of ReptilesEvolution Of SpidersEvolution Of TetrapodsViral EvolutionEvolution Of InfluenzaOrgan (anatomy)Evolution Of CellsModels Of DNA EvolutionEvolution Of FlagellaEukaryoteSymbiogenesisChromosomeEndomembrane SystemMitochondrionCell NucleusPlastidEvolution Of The EyeEvolution Of HairEvolution Of Mammalian Auditory OssiclesEvolution Of Nervous SystemsEvolution Of The BrainBiological ProcessEvolution Of AgeingDeathProgrammed Cell DeathOrigin Of Avian FlightEvolution Of Biological ComplexityCo-operation (evolution)Evolution Of Color VisionEvolution Of Color Vision In PrimatesEvolution Of EmotionEmpathyEvolutionary EthicsEvolution Of EusocialityImmune SystemMetabolismMonogamy In AnimalsEvolution Of MoralityMosaic EvolutionEvolution Of MulticellularityEvolution Of Sexual ReproductionAnisogamyBiological Life CycleMating TypeSex-determination SystemEvolution Of Snake VenomTempo And Mode In EvolutionPhyletic GradualismPunctuated EquilibriumSaltation (biology)MicromutationMacromutationUniformitarianismCatastrophismSpeciationAllopatric SpeciationAnagenesisCatagenesis (biology)CladogenesisEcological SpeciationHybrid SpeciationParapatric SpeciationPeripatric SpeciationReinforcement (speciation)Sympatric SpeciationHistory Of Evolutionary ThoughtEvolutionary Ideas Of The Renaissance And EnlightenmentTransmutation Of SpeciesCharles DarwinOn The Origin Of SpeciesHistory Of PaleontologyTransitional FossilBlending InheritanceMendelian InheritanceThe Eclipse Of DarwinismModern Synthesis (20th Century)History Of Molecular EvolutionExtended Evolutionary SynthesisDarwinismAlternatives To Evolution By Natural SelectionCatastrophismLamarckismOrthogenesisMutationismSaltationismStructuralism (biology)Spandrel (biology)Theistic EvolutionVitalismBiogeographyEcological GeneticsMolecular EvolutionPhylogeneticsPhylogenetic TreePolymorphism (biology)ProtocellSystematicsCategory:Evolutionary BiologyPortal:Evolutionary BiologyWikipedia:WikiProject Evolutionary BiologyPortal:BiologyPortal:MedicinePortal:Evolutionary BiologyHelp:CategoryCategory:MutationCategory:Evolutionary BiologyCategory:GeneticsCategory:Radiation Health EffectsCategory:Molecular EvolutionCategory:Pages With DOIs Inactive Since 2017Category:CS1 Maint: Multiple Names: Authors ListCategory:Webarchive Template Wayback LinksCategory:Pages Containing Links To Subscription-only ContentCategory:All Articles 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